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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13586-RA through 18771 annotations produced 1 hits



ion transport peptide (itp):

Annotation Number : CG13586
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035023
Gbrowse : chr2R:20427494-20445892 (+) // 100.0 //
Probeset : 1628778_at
Accessions : protein= NP_001036569; /// NP_001163293; /// NP_001163294; /// NP_611931;, nucleotide= NM_001043104; /// NM_001169822; /// NM_001169823; /// NM_138087;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005179 // hormone activity // non-traceable author statement /// 0005184 // neuropeptide hormone activity // inferred f
FlyMine data for FBgn0035023.
TRiP has 1 RNAi stocks for FBgn0035023 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035023 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1135 184 of 419.00Up
Head367 264 of 4 6.20Up
Eye332 364 of 4 5.56Up
Thoracicoabdominal ganglion195 134 of 4 3.30Up
Salivary gland44 84 of 4 0.75None
Crop38 14 of 4 0.60Down
Midgut40 54 of 4 0.70Down
Tubule92 194 of 4 1.60None
Hindgut83 64 of 4 1.40Up
Heart1081 744 of 418.09Up
Fat body51 74 of 4 0.86None
Ovary5 00 of 4 0.10Down
Testis9 14 of 4 0.20Down
Male accessory glands38 14 of 4 0.60Down
Virgin spermatheca24 14 of 4 0.41Down
Mated spermatheca25 34 of 4 0.43Down
Adult carcass143 94 of 4 2.40Up
Larval CNS233 204 of 4 3.91Up
Larval Salivary gland18 34 of 4 0.31Down
Larval midgut45 44 of 4 0.77Down
Larval tubule129 94 of 4 2.20Up
Larval hindgut83 14 of 4 1.39Up
Larval fat body20 24 of 4 0.30Down
Larval trachea274 294 of 4 4.60Up
Larval carcass88 164 of 4 1.48None
S2 cells (growing)127 64 of 4 2.13Up
Whole fly59 14 of 4

Looking for CG13586-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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