FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13605-RA through 18771 annotations produced 1 hits

(CG13605):

Annotation Number : CG13605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039150
Gbrowse : chr3R:19935664-19938124 (-) // 100.0 //
Probeset : 1625284_at
Accessions : protein= NP_651214;, nucleotide= NM_142957;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0039150.
VDRC has 1 RNAi stocks for FBgn0039150 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	138 ± 7	4 of 4	1.40	Up
Head	99 ± 9	4 of 4	1.00	None
Eye	70 ± 7	4 of 4	0.74	None
Thoracicoabdominal ganglion	129 ± 5	4 of 4	1.40	Up
Salivary gland	196 ± 13	4 of 4	2.06	Up
Crop	85 ± 2	4 of 4	0.90	None
Midgut	116 ± 1	4 of 4	1.20	None
Tubule	181 ± 6	4 of 4	1.90	Up
Hindgut	105 ± 3	4 of 4	1.10	None
Heart	107 ± 4	4 of 4	1.12	None
Fat body	170 ± 14	4 of 4	1.78	Up
Ovary	175 ± 2	4 of 4	1.80	Up
Testis	160 ± 7	4 of 4	1.70	Up
Male accessory glands	190 ± 7	4 of 4	2.00	Up
Virgin spermatheca	177 ± 8	4 of 4	1.85	Up
Mated spermatheca	145 ± 17	4 of 4	1.52	None
Adult carcass	117 ± 3	4 of 4	1.20	None
Larval CNS	108 ± 6	4 of 4	1.14	None
Larval Salivary gland	242 ± 11	4 of 4	2.53	Up
Larval midgut	179 ± 10	4 of 4	1.88	Up
Larval tubule	243 ± 8	4 of 4	2.50	Up
Larval hindgut	146 ± 12	4 of 4	1.53	Up
Larval fat body	141 ± 9	4 of 4	1.50	Up
Larval trachea	70 ± 7	4 of 4	0.74	None
Larval carcass	103 ± 8	4 of 4	1.08	None
S2 cells (growing)	150 ± 4	4 of 4	1.58	Up
Whole fly	95 ± 9	4 of 4

Looking for CG13605-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720