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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13606-RA through 18771 annotations produced 1 hits



(CG13606):

Annotation Number : CG13606
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039161
Gbrowse : chr3R:19998352-20007141 (+) // 100.0 //
Probeset : 1637880_at
Accessions : protein= NP_001036750; /// NP_651225;, nucleotide= NM_001043285; /// NM_142968;
FlyMine data for FBgn0039161.
BDGP gene expression has embryonic in situ data for CG13606: 10 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0039161 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 14 of 4 1.00None
Head21 ± 24 of 4 2.30Up
Eye12 ± 14 of 4 1.37None
Thoracicoabdominal ganglion8 ± 00 of 4 0.90None
Salivary gland19 ± 31 of 4 2.09None
Crop35 ± 34 of 4 3.70Up
Midgut7 ± 20 of 4 0.80None
Tubule4 ± 00 of 4 0.50Down
Hindgut73 ± 14 of 4 7.80Up
Heart6 ± 03 of 4 0.70None
Fat body16 ± 33 of 4 1.70Up
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 11 of 4 0.40None
Male accessory glands10 ± 01 of 4 1.10None
Virgin spermatheca5 ± 10 of 4 0.53None
Mated spermatheca7 ± 20 of 4 0.82None
Adult carcass19 ± 32 of 4 2.10None
Larval CNS5 ± 02 of 4 0.63None
Larval Salivary gland10 ± 10 of 4 1.14None
Larval midgut7 ± 11 of 4 0.74None
Larval tubule4 ± 10 of 4 0.50None
Larval hindgut15 ± 14 of 4 1.66None
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea16 ± 34 of 4 1.80Up
Larval carcass503 ± 3794 of 453.69None
S2 cells (growing)1 ± 00 of 4 0.16Down
Whole fly9 ± 22 of 4

Looking for CG13606-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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