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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13607-RA through 18771 annotations produced 1 hits



(CG13607):

Annotation Number : CG13607
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039151
Gbrowse : chr3R:19939764-19941867 (-) // 100.0 //
Probeset : 1636170_at
Accessions : protein= NP_651215;, nucleotide= NM_142958;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0039151.
BDGP gene expression has embryonic in situ data for CG13607: 30 pix of staining in 10 body parts.
VDRC has 2 RNAi stocks for FBgn0039151 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 14 of 4 0.10Down
Head294 194 of 4 3.80Up
Eye119 134 of 4 1.53None
Thoracicoabdominal ganglion7 30 of 4 0.10Down
Salivary gland15 30 of 4 0.20Down
Crop6 10 of 4 0.10Down
Midgut39 34 of 4 0.50Down
Tubule10 21 of 4 0.10Down
Hindgut31 14 of 4 0.40Down
Heart436 344 of 4 5.59Up
Fat body1150 1114 of 414.75Up
Ovary1 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca542 364 of 4 6.95Up
Mated spermatheca734 454 of 4 9.41Up
Adult carcass459 494 of 4 5.90Up
Larval CNS7 01 of 4 0.09Down
Larval Salivary gland17 14 of 4 0.22Down
Larval midgut19 33 of 4 0.24Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut19 34 of 4 0.25Down
Larval fat body728 484 of 4 9.30Up
Larval trachea11 82 of 4 0.15Down
Larval carcass10 10 of 4 0.13Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly78 114 of 4

Looking for CG13607-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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