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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1361-RA through 18771 annotations produced 1 hits



andropin (Anp):

Annotation Number : CG1361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000094
Gbrowse : chr3R:26035706-26035942 (+) // 100.0 //
Probeset : 1630940_at
Accessions : protein= NP_524587;, nucleotide= NM_079848;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0000094.
BioGrid reports that CG1361 interacts with CG7910 .
VDRC has 2 RNAi stocks for FBgn0000094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion3 ± 11 of 4 0.00Down
Salivary gland9 ± 50 of 4 0.01Down
Crop2 ± 10 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart4 ± 00 of 4 0.00Down
Fat body7 ± 32 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis108 ± 354 of 4 0.10Down
Male accessory glands3211 ± 5234 of 4 2.50Up
Virgin spermatheca3 ± 11 of 4 0.00Down
Mated spermatheca3 ± 00 of 4 0.00Down
Adult carcass5 ± 30 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland4 ± 11 of 4 0.00Down
Larval midgut10 ± 32 of 4 0.01Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.00Down
Larval fat body5 ± 10 of 4 0.00Down
Larval trachea4 ± 31 of 4 0.00Down
Larval carcass2 ± 00 of 4 0.00Down
S2 cells (growing)393 ± 64 of 4 0.30Down
Whole fly1293 ± 2114 of 4

Looking for CG1361-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime