Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13611-RA through 18771 annotations produced 1 hits



(CG13611):

Annotation Number : CG13611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039177
Gbrowse : chr3R:20105293-20107243 (+) // 100.0 //
Probeset : 1633687_at
Accessions : protein= NP_651239;, nucleotide= NM_142982;
Interpro : "0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity
FlyMine data for FBgn0039177.
BDGP gene expression has embryonic in situ data for CG13611: 8 pix of staining in 1 body parts.
BioGrid reports that CG13611 interacts with CG6363 .
VDRC has 2 RNAi stocks for FBgn0039177 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.10Down
Head10 ± 11 of 4 0.30Down
Eye8 ± 10 of 4 0.23Down
Thoracicoabdominal ganglion9 ± 11 of 4 0.30Down
Salivary gland16 ± 50 of 4 0.45Down
Crop13 ± 31 of 4 0.40Down
Midgut12 ± 30 of 4 0.30Down
Tubule8 ± 00 of 4 0.20Down
Hindgut11 ± 10 of 4 0.30Down
Heart6 ± 11 of 4 0.18Down
Fat body13 ± 31 of 4 0.37Down
Ovary6 ± 12 of 4 0.20Down
Testis388 ± 144 of 410.60Up
Male accessory glands15 ± 10 of 4 0.40Down
Virgin spermatheca11 ± 10 of 4 0.31Down
Mated spermatheca10 ± 10 of 4 0.30Down
Adult carcass17 ± 40 of 4 0.50Down
Larval CNS10 ± 04 of 4 0.28Down
Larval Salivary gland13 ± 21 of 4 0.36Down
Larval midgut22 ± 20 of 4 0.60Down
Larval tubule9 ± 10 of 4 0.30Down
Larval hindgut9 ± 10 of 4 0.25Down
Larval fat body39 ± 132 of 4 1.10None
Larval trachea8 ± 31 of 4 0.24Down
Larval carcass6 ± 10 of 4 0.17Down
S2 cells (growing)10 ± 11 of 4 0.29Down
Whole fly36 ± 24 of 4

Looking for CG13611-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime