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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13614-RA through 18771 annotations produced 1 hits



(CG13614):

Annotation Number : CG13614
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039194
Gbrowse : chr3R:20195499-20196453 (+) // 100.0 //
Probeset : 1640095_at
Accessions : protein= NP_651256; /// NP_996283;, nucleotide= NM_142999; /// NM_206560;
FlyMine data for FBgn0039194.
BioGrid reports that CG13614 interacts with CG6569 .
VDRC has 3 RNAi stocks for FBgn0039194 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.30None
Head0 ± 00 of 4 0.50None
Eye1 ± 00 of 4 1.09None
Thoracicoabdominal ganglion0 ± 00 of 4 0.50None
Salivary gland8 ± 20 of 4 5.86None
Crop3 ± 10 of 4 2.10None
Midgut4 ± 40 of 4 3.30None
Tubule2 ± 00 of 4 1.90Up
Hindgut3 ± 10 of 4 2.20None
Heart1 ± 10 of 4 1.24None
Fat body3 ± 20 of 4 2.19None
Ovary0 ± 00 of 4 0.40None
Testis0 ± 00 of 4 0.50None
Male accessory glands3 ± 10 of 4 2.40None
Virgin spermatheca1 ± 00 of 4 1.33None
Mated spermatheca2 ± 10 of 4 1.60None
Adult carcass2 ± 00 of 4 1.80None
Larval CNS1 ± 00 of 4 0.79None
Larval Salivary gland2 ± 00 of 4 1.62None
Larval midgut1 ± 00 of 4 0.67None
Larval tubule2 ± 10 of 4 1.60None
Larval hindgut34 ± 104 of 424.05Up
Larval fat body1 ± 10 of 4 1.30None
Larval trachea1 ± 00 of 4 0.79None
Larval carcass3 ± 10 of 4 2.48None
S2 cells (growing)0 ± 00 of 4 0.55None
Whole fly1 ± 00 of 4

Looking for CG13614-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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