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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13615-RA through 18771 annotations produced 1 hits



(CG13615):

Annotation Number : CG13615
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039199
Gbrowse : chr3R:20216436-20217449 (+) // 100.0 //
Probeset : 1636397_at
Accessions : protein= NP_651261;, nucleotide= NM_143004;
FlyMine data for FBgn0039199.
VDRC has 4 RNAi stocks for FBgn0039199 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.90None
Head4 ± 10 of 4 2.40None
Eye0 ± 00 of 4 0.48None
Thoracicoabdominal ganglion1 ± 00 of 4 1.00None
Salivary gland2 ± 00 of 4 1.29None
Crop1 ± 10 of 4 0.90None
Midgut2 ± 00 of 4 1.20None
Tubule0 ± 00 of 4 0.40Down
Hindgut1 ± 00 of 4 0.90None
Heart0 ± 00 of 4 0.48None
Fat body10 ± 20 of 4 5.31Up
Ovary2 ± 00 of 4 1.20None
Testis5 ± 10 of 4 2.90None
Male accessory glands2 ± 00 of 4 1.20None
Virgin spermatheca2 ± 00 of 4 1.12None
Mated spermatheca4 ± 10 of 4 2.53None
Adult carcass3 ± 00 of 4 1.90None
Larval CNS3 ± 20 of 4 2.08None
Larval Salivary gland2 ± 00 of 4 1.43None
Larval midgut1 ± 00 of 4 0.52None
Larval tubule1 ± 00 of 4 0.80None
Larval hindgut1 ± 00 of 4 0.64None
Larval fat body5 ± 10 of 4 3.10None
Larval trachea3 ± 20 of 4 1.67None
Larval carcass3 ± 10 of 4 1.89None
S2 cells (growing)2 ± 10 of 4 1.23None
Whole fly1 ± 00 of 4

Looking for CG13615-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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