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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13622-RA through 18771 annotations produced 1 hits



(CG13622):

Annotation Number : CG13622
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039202
Gbrowse : chr3R:20348311-20349130 (-) // 100.0 //
Probeset : 1623500_at
Accessions : protein= NP_651264;, nucleotide= NM_143007;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039202.
BioGrid reports that CG13622 interacts with CG7399 CG4394 .
VDRC has 3 RNAi stocks for FBgn0039202 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head1 ± 00 of 4 0.70None
Eye1 ± 00 of 4 0.43None
Thoracicoabdominal ganglion4 ± 11 of 4 1.70None
Salivary gland13 ± 10 of 4 5.64Up
Crop13 ± 12 of 4 5.80Up
Midgut6 ± 20 of 4 2.70None
Tubule4 ± 00 of 4 2.10Up
Hindgut5 ± 12 of 4 2.30None
Heart3 ± 10 of 4 1.45None
Fat body8 ± 11 of 4 3.39Up
Ovary2 ± 00 of 4 1.20None
Testis1 ± 00 of 4 0.60None
Male accessory glands2 ± 10 of 4 1.10None
Virgin spermatheca7 ± 10 of 4 3.34Up
Mated spermatheca6 ± 11 of 4 2.93Up
Adult carcass3 ± 10 of 4 1.50None
Larval CNS2 ± 10 of 4 1.20None
Larval Salivary gland2 ± 00 of 4 0.85None
Larval midgut6 ± 10 of 4 2.65None
Larval tubule3 ± 20 of 4 1.30None
Larval hindgut2 ± 10 of 4 1.14None
Larval fat body9 ± 22 of 4 3.90None
Larval trachea3 ± 30 of 4 1.41None
Larval carcass7 ± 10 of 4 3.36Up
S2 cells (growing)2 ± 10 of 4 1.14None
Whole fly2 ± 00 of 4

Looking for CG13622-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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