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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1363-RA through 18771 annotations produced 1 hits



blown fuse (blow):

Annotation Number : CG1363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004133
Gbrowse : chr2R:3467989-3474548 (-) // 100.0 //
Probeset : 1623594_at
Accessions : protein= NP_001163073; /// NP_001163074; /// NP_724580;, nucleotide= NM_001169602; /// NM_001169603; /// NM_165542;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement
FlyMine data for FBgn0004133.
BDGP gene expression has embryonic in situ data for blow: 16 pix of staining in 3 body parts.
BioGrid reports that CG1363 interacts with CG1587 CG1363 CG15697 CG17265 CG6486 CG6770 CG7001 Dmel CG17162 .
VDRC has 3 RNAi stocks for FBgn0004133 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 34 of 4 1.80Up
Head69 ± 34 of 4 1.60Up
Eye188 ± 74 of 4 4.38Up
Thoracicoabdominal ganglion111 ± 14 of 4 2.60Up
Salivary gland229 ± 254 of 4 5.33Up
Crop35 ± 34 of 4 0.80None
Midgut11 ± 12 of 4 0.30Down
Tubule7 ± 11 of 4 0.20Down
Hindgut237 ± 114 of 4 5.50Up
Heart33 ± 44 of 4 0.79None
Fat body10 ± 33 of 4 0.25Down
Ovary30 ± 34 of 4 0.70Down
Testis71 ± 34 of 4 1.70Up
Male accessory glands61 ± 74 of 4 1.40None
Virgin spermatheca16 ± 13 of 4 0.37Down
Mated spermatheca17 ± 13 of 4 0.41Down
Adult carcass24 ± 34 of 4 0.60Down
Larval CNS112 ± 84 of 4 2.63Up
Larval Salivary gland21 ± 24 of 4 0.51Down
Larval midgut17 ± 04 of 4 0.41Down
Larval tubule14 ± 24 of 4 0.30Down
Larval hindgut237 ± 34 of 4 5.52Up
Larval fat body19 ± 04 of 4 0.40Down
Larval trachea199 ± 164 of 4 4.64Up
Larval carcass60 ± 44 of 4 1.41Up
S2 cells (growing)233 ± 84 of 4 5.43Up
Whole fly43 ± 14 of 4

Looking for CG1363-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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