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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13631-RA through 18771 annotations produced 1 hits



(CG13631):

Annotation Number : CG13631
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040600
Gbrowse : chr3R:20595074-20595850 (+) // 100.0 //
Probeset : 1639443_at
Accessions : protein= NP_652252;, nucleotide= NM_143995;
FlyMine data for FBgn0040600.
BDGP gene expression has embryonic in situ data for CG13631: 21 pix of staining in 10 body parts.
BioGrid reports that CG13631 interacts with CG2944 .
VDRC has 2 RNAi stocks for FBgn0040600 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain870 ± 124 of 4 4.00Up
Head828 ± 684 of 4 3.90Up
Eye1920 ± 1064 of 4 8.92Up
Thoracicoabdominal ganglion1207 ± 454 of 4 5.60Up
Salivary gland928 ± 564 of 4 4.31Up
Crop653 ± 384 of 4 3.00Up
Midgut94 ± 14 of 4 0.40Down
Tubule594 ± 574 of 4 2.80Up
Hindgut590 ± 274 of 4 2.70Up
Heart1522 ± 494 of 4 7.07Up
Fat body485 ± 884 of 4 2.26Up
Ovary27 ± 34 of 4 0.10Down
Testis62 ± 14 of 4 0.30Down
Male accessory glands227 ± 124 of 4 1.10None
Virgin spermatheca511 ± 214 of 4 2.37Up
Mated spermatheca842 ± 1174 of 4 3.91Up
Adult carcass478 ± 524 of 4 2.20Up
Larval CNS64 ± 134 of 4 0.30Down
Larval Salivary gland426 ± 164 of 4 1.98Up
Larval midgut76 ± 64 of 4 0.35Down
Larval tubule118 ± 104 of 4 0.50Down
Larval hindgut226 ± 84 of 4 1.05None
Larval fat body40 ± 54 of 4 0.20Down
Larval trachea571 ± 504 of 4 2.66Up
Larval carcass203 ± 74 of 4 0.95None
S2 cells (growing)481 ± 54 of 4 2.24Up
Whole fly215 ± 104 of 4

Looking for CG13631-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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