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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13640-RA through 18771 annotations produced 1 hits



(CG13640):

Annotation Number : CG13640
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039237
Gbrowse : chr3R:20687372-20687884 (-) // 100.0 //
Probeset : 1636000_at
Accessions : protein= NP_651300;, nucleotide= NM_143043;
FlyMine data for FBgn0039237.
BDGP gene expression has embryonic in situ data for CG13640: 14 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0039237 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 2.50None
Head2 ± 10 of 4 5.60None
Eye25 ± 103 of 472.21None
Thoracicoabdominal ganglion0 ± 00 of 4 1.60None
Salivary gland1 ± 00 of 4 4.29None
Crop1 ± 00 of 4 3.30None
Midgut0 ± 00 of 4 1.60Up
Tubule0 ± 00 of 4 1.80Up
Hindgut1 ± 00 of 4 3.30None
Heart0 ± 00 of 4 2.50Up
Fat body0 ± 00 of 4 1.50None
Ovary0 ± 00 of 4 1.90None
Testis0 ± 00 of 4 1.70None
Male accessory glands1 ± 00 of 4 4.20None
Virgin spermatheca0 ± 00 of 4 1.43None
Mated spermatheca0 ± 00 of 4 1.71None
Adult carcass0 ± 00 of 4 2.60Up
Larval CNS10 ± 23 of 429.50Up
Larval Salivary gland0 ± 00 of 4 1.57None
Larval midgut1 ± 00 of 4 2.79Up
Larval tubule1 ± 10 of 4 4.60None
Larval hindgut44 ± 34 of 4125.86Up
Larval fat body0 ± 00 of 4 2.00Up
Larval trachea2559 ± 10144 of 47312.29Up
Larval carcass4 ± 00 of 412.21Up
S2 cells (growing)0 ± 00 of 4 1.00None
Whole fly0 ± 00 of 4

Looking for CG13640-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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