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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13645-RB through 18771 annotations produced 2 hits



nicotinamide mononucleotide adenylyltransferase 1 (Nmnat):

Annotation Number : CG13645
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039254
Gbrowse : chr3R:20770958-20772555 (+) // 100.0 //
Probeset : 1627165_a_at
Accessions : protein= NP_651315; /// NP_733064;, nucleotide= NM_143058; /// NM_170185;
Interpro : 0000309 // nicotinamide-nucleotide adenylyltransferase activity // inferred from direct assay /// 0000309 // nicotinamid
FlyMine data for FBgn0039254.
BDGP gene expression has embryonic in situ data for CG13645: 4 pix of staining in 1 body parts.
BioGrid reports that CG13645 interacts with CG6459 .
TRiP has 1 RNAi stocks for FBgn0039254 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039254 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain180 54 of 4 3.50Up
Head85 54 of 4 1.70Up
Eye179 124 of 4 3.45Up
Thoracicoabdominal ganglion163 94 of 4 3.10Up
Salivary gland64 13 of 4 1.25Up
Crop49 24 of 4 0.90None
Midgut33 34 of 4 0.60Down
Tubule74 34 of 4 1.40Up
Hindgut61 24 of 4 1.20None
Heart52 34 of 4 1.00None
Fat body43 84 of 4 0.83None
Ovary78 24 of 4 1.50Up
Testis46 24 of 4 0.90None
Male accessory glands55 44 of 4 1.10None
Virgin spermatheca33 24 of 4 0.64Down
Mated spermatheca25 34 of 4 0.50Down
Adult carcass55 44 of 4 1.10None
Larval CNS46 44 of 4 0.90None
Larval Salivary gland37 54 of 4 0.71None
Larval midgut28 14 of 4 0.55Down
Larval tubule57 54 of 4 1.10None
Larval hindgut27 14 of 4 0.52Down
Larval fat body40 34 of 4 0.80None
Larval trachea35 34 of 4 0.68Down
Larval carcass27 34 of 4 0.54Down
S2 cells (growing)55 44 of 4 1.07None
Whole fly51 44 of 4



nicotinamide mononucleotide adenylyltransferase 1 (Nmnat):

Annotation Number : CG13645
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039254
Gbrowse : chr3R:20770958-20772555 (+) // 100.0 //
Probeset : 1625565_at
Accessions : protein= NP_651315; /// NP_733064;, nucleotide= NM_143058; /// NM_170185;
Interpro : 0000309 // nicotinamide-nucleotide adenylyltransferase activity // inferred from direct assay /// 0000309 // nicotinamid
FlyMine data for FBgn0039254.
BDGP gene expression has embryonic in situ data for CG13645: 4 pix of staining in 1 body parts.
BioGrid reports that CG13645 interacts with CG6459 .
TRiP has 1 RNAi stocks for FBgn0039254 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039254 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 24 of 4 1.00None
Head59 14 of 4 1.40Up
Eye216 194 of 4 5.27Up
Thoracicoabdominal ganglion51 44 of 4 1.30None
Salivary gland130 74 of 4 3.18Up
Crop33 24 of 4 0.80None
Midgut89 44 of 4 2.20Up
Tubule155 64 of 4 3.80Up
Hindgut58 24 of 4 1.40Up
Heart50 24 of 4 1.23None
Fat body41 44 of 4 1.01None
Ovary18 14 of 4 0.40Down
Testis66 24 of 4 1.60Up
Male accessory glands142 24 of 4 3.50Up
Virgin spermatheca90 44 of 4 2.20Up
Mated spermatheca111 114 of 4 2.71Up
Adult carcass51 24 of 4 1.30None
Larval CNS9 00 of 4 0.24Down
Larval Salivary gland92 64 of 4 2.25Up
Larval midgut61 84 of 4 1.48None
Larval tubule82 64 of 4 2.00Up
Larval hindgut31 64 of 4 0.78None
Larval fat body44 44 of 4 1.10None
Larval trachea13 61 of 4 0.34Down
Larval carcass16 22 of 4 0.40Down
S2 cells (growing)21 24 of 4 0.51Down
Whole fly41 44 of 4

Looking for CG13645-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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