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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13648-RA through 18771 annotations produced 1 hits



tenectin (tnc):

Annotation Number : CG13648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039257
Gbrowse : chr3R:20837484-20847081 (+) // 100.0 //
Probeset : 1624677_at
Accessions : protein= NP_651318;, nucleotide= NM_143061;
Pathway : 0031012 // extracellular matrix // inferred from direct assay
Interpro : 0005178 // integrin binding // inferred from direct assay
FlyMine data for FBgn0039257.
VDRC has 1 RNAi stocks for FBgn0039257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 1.00None
Head2 00 of 4 0.50None
Eye3 10 of 4 0.65None
Thoracicoabdominal ganglion3 00 of 4 0.80None
Salivary gland4 00 of 4 0.97None
Crop3 00 of 4 0.80None
Midgut8 10 of 4 1.70None
Tubule4 00 of 4 1.00None
Hindgut3 00 of 4 0.70None
Heart4 10 of 4 1.02None
Fat body4 20 of 4 0.93None
Ovary3 00 of 4 0.60None
Testis15 40 of 4 3.30None
Male accessory glands6 30 of 4 1.50None
Virgin spermatheca2 00 of 4 0.50None
Mated spermatheca2 00 of 4 0.43None
Adult carcass7 20 of 4 1.50None
Larval CNS20 31 of 4 4.32Up
Larval Salivary gland6 10 of 4 1.37None
Larval midgut10 20 of 4 2.26None
Larval tubule4 10 of 4 0.90None
Larval hindgut66 64 of 414.03Up
Larval fat body10 40 of 4 2.10None
Larval trachea1 00 of 4 0.31None
Larval carcass9 40 of 4 2.03None
S2 cells (growing)5 00 of 4 1.15None
Whole fly4 10 of 4

Looking for CG13648-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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