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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13653-RA through 18771 annotations produced 1 hits


Annotation Number : CG13653
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039288
Gbrowse : chr3R:21021281-21022057 (+) // 100.0 //
Probeset : 1637824_at
Accessions : protein= NP_651348;, nucleotide= NM_143091;
FlyMine data for FBgn0039288.
BDGP gene expression has embryonic in situ data for CG13653: 53 pix of staining in 10 body parts.
VDRC has 3 RNAi stocks for FBgn0039288 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head3 00 of 4 1.20None
Eye2 00 of 4 0.82None
Thoracicoabdominal ganglion1 00 of 4 0.50None
Salivary gland4 20 of 4 1.73None
Crop1 00 of 4 0.40None
Midgut0 00 of 4 0.30None
Tubule1 00 of 4 0.60Down
Hindgut1 00 of 4 0.60None
Heart3 10 of 4 1.55None
Fat body5 20 of 4 2.25None
Ovary0 00 of 4 0.10None
Testis0 00 of 4 0.20None
Male accessory glands4 10 of 4 1.80None
Virgin spermatheca1 00 of 4 0.62None
Mated spermatheca1 00 of 4 0.57None
Adult carcass2 10 of 4 0.90None
Larval CNS1 10 of 4 0.70None
Larval Salivary gland1 10 of 4 0.69None
Larval midgut0 00 of 4 0.29None
Larval tubule0 00 of 4 0.30None
Larval hindgut1 00 of 4 0.78None
Larval fat body2 10 of 4 1.10None
Larval trachea0 00 of 4 0.34None
Larval carcass2 00 of 4 1.08None
S2 cells (growing)0 00 of 4 0.37None
Whole fly2 10 of 4

Looking for CG13653-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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