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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1368-RA through 18771 annotations produced 1 hits



(CG1368):

Annotation Number : CG1368
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030539
Gbrowse : chrX:14068793-14069703 (+) // 100.0 //
Probeset : 1630670_at
Accessions : protein= NP_572939;, nucleotide= NM_132711;
Interpro : 0005213 // structural constituent of chorion // inferred from sequence or structural similarity /// 0005515 // protein b
FlyMine data for FBgn0030539.
BDGP gene expression has embryonic in situ data for CG1368: 23 pix of staining in 4 body parts.
BioGrid reports that CG1368 interacts with CG6258 CG6521 CG7080 CG18292 CG18408 CG7697 CG7813 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 33 of 4 0.40None
Head17 ± 24 of 4 0.40None
Eye35 ± 64 of 4 0.83None
Thoracicoabdominal ganglion17 ± 13 of 4 0.40None
Salivary gland37 ± 42 of 4 0.89None
Crop36 ± 44 of 4 0.90None
Midgut35 ± 21 of 4 0.80None
Tubule7 ± 00 of 4 0.20Down
Hindgut33 ± 03 of 4 0.80None
Heart23 ± 53 of 4 0.55None
Fat body40 ± 150 of 4 0.96None
Ovary17 ± 42 of 4 0.40None
Testis63 ± 64 of 4 1.50None
Male accessory glands15 ± 10 of 4 0.40None
Virgin spermatheca9 ± 10 of 4 0.22Down
Mated spermatheca9 ± 20 of 4 0.21Down
Adult carcass134 ± 284 of 4 3.20Up
Larval CNS16 ± 41 of 4 0.38None
Larval Salivary gland30 ± 51 of 4 0.73None
Larval midgut94 ± 64 of 4 2.25Up
Larval tubule21 ± 30 of 4 0.50None
Larval hindgut542 ± 154 of 412.90Up
Larval fat body26 ± 52 of 4 0.60None
Larval trachea2089 ± 4234 of 449.66Up
Larval carcass881 ± 1834 of 420.96Up
S2 cells (growing)13 ± 11 of 4 0.33Down
Whole fly42 ± 83 of 4

Looking for CG1368-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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