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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13687-RA through 18771 annotations produced 1 hits



prothoracicotropic hormone (Ptth):

Annotation Number : CG13687
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013323
Gbrowse : chr2L:575776-576586 (-) // 100.0 //
Probeset : 1632646_at
Accessions : protein= NP_608537;, nucleotide= NM_134693;
Pathway : 0043196 // varicosity // inferred from direct assay
Interpro : 0005179 // hormone activity // non-traceable author statement /// 0005184 // neuropeptide hormone activity // inferred f
FlyMine data for FBgn0013323.
BioGrid reports that CG13687 interacts with CG3937 .
TRiP has 1 RNAi stocks for FBgn0013323 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013323 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 04 of 4 1.40None
Head23 34 of 4 1.60None
Eye37 44 of 4 2.62Up
Thoracicoabdominal ganglion28 24 of 4 2.00Up
Salivary gland23 52 of 4 1.60None
Crop13 42 of 4 0.90None
Midgut18 24 of 4 1.30None
Tubule49 24 of 4 3.40Up
Hindgut32 24 of 4 2.30Up
Heart22 24 of 4 1.58None
Fat body21 73 of 4 1.47None
Ovary6 00 of 4 0.40Down
Testis44 14 of 4 3.10Up
Male accessory glands18 11 of 4 1.30None
Virgin spermatheca14 21 of 4 1.02None
Mated spermatheca23 13 of 4 1.64Up
Adult carcass19 22 of 4 1.40None
Larval CNS59 14 of 4 4.12Up
Larval Salivary gland5 10 of 4 0.36Down
Larval midgut18 21 of 4 1.27None
Larval tubule24 14 of 4 1.70Up
Larval hindgut11 12 of 4 0.80None
Larval fat body22 34 of 4 1.60None
Larval trachea8 12 of 4 0.60Down
Larval carcass18 31 of 4 1.31None
S2 cells (growing)42 14 of 4 2.91Up
Whole fly14 04 of 4

Looking for CG13687-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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