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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13691-RA through 18771 annotations produced 1 hits



BBS8 (BBS8):

Annotation Number : CG13691
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031255
Gbrowse : chr2L:423451-425291 (+) // 100.0 //
Probeset : 1627476_at
Accessions : protein= NP_608524;, nucleotide= NM_134680;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0031255.
Homophila reports that CG13691 is a close match (1e-49) to human gene BBS8;TTC8 (NP_938052), a gene associated with Bardet-Biedl syndrome 8, 209900 (3).
VDRC has 1 RNAi stocks for FBgn0031255 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 1.20None
Head14 ± 11 of 4 3.30Up
Eye6 ± 10 of 4 1.49None
Thoracicoabdominal ganglion4 ± 10 of 4 0.90None
Salivary gland6 ± 30 of 4 1.52None
Crop9 ± 20 of 4 2.20None
Midgut5 ± 30 of 4 1.30None
Tubule3 ± 00 of 4 0.70Down
Hindgut6 ± 20 of 4 1.40None
Heart2 ± 00 of 4 0.55None
Fat body9 ± 40 of 4 2.06None
Ovary4 ± 00 of 4 1.00None
Testis7 ± 10 of 4 1.60None
Male accessory glands13 ± 50 of 4 3.00None
Virgin spermatheca3 ± 10 of 4 0.84None
Mated spermatheca3 ± 10 of 4 0.82None
Adult carcass5 ± 10 of 4 1.20None
Larval CNS12 ± 31 of 4 2.88None
Larval Salivary gland4 ± 10 of 4 0.89None
Larval midgut9 ± 20 of 4 2.15None
Larval tubule9 ± 10 of 4 2.10None
Larval hindgut6 ± 10 of 4 1.46None
Larval fat body6 ± 10 of 4 1.50None
Larval trachea3 ± 10 of 4 0.79None
Larval carcass9 ± 20 of 4 2.20None
S2 cells (growing)10 ± 21 of 4 2.31None
Whole fly4 ± 20 of 4

Looking for CG13691-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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