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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13692-RA through 18771 annotations produced 1 hits



(CG13692):

Annotation Number : CG13692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031254
Gbrowse : chr2L:421799-422435 (+) // 100.0 //
Probeset : 1623065_at
Accessions : protein= NP_608523;, nucleotide= NM_134679;
Interpro : 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from el
FlyMine data for FBgn0031254.
TRiP has 1 RNAi stocks for FBgn0031254 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031254 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.70None
Head7 ± 11 of 4 0.80None
Eye6 ± 11 of 4 0.71None
Thoracicoabdominal ganglion7 ± 11 of 4 0.80None
Salivary gland19 ± 51 of 4 2.04None
Crop11 ± 00 of 4 1.20None
Midgut18 ± 12 of 4 1.90Up
Tubule8 ± 10 of 4 0.90None
Hindgut9 ± 10 of 4 0.90None
Heart5 ± 11 of 4 0.60None
Fat body12 ± 20 of 4 1.24None
Ovary3 ± 00 of 4 0.30None
Testis21 ± 24 of 4 2.20Up
Male accessory glands8 ± 20 of 4 0.90None
Virgin spermatheca8 ± 21 of 4 0.91None
Mated spermatheca10 ± 11 of 4 1.06None
Adult carcass7 ± 20 of 4 0.80None
Larval CNS24 ± 54 of 4 2.58Up
Larval Salivary gland12 ± 32 of 4 1.34None
Larval midgut13 ± 10 of 4 1.42None
Larval tubule9 ± 11 of 4 1.00None
Larval hindgut10 ± 10 of 4 1.06None
Larval fat body10 ± 31 of 4 1.10None
Larval trachea6 ± 01 of 4 0.70None
Larval carcass11 ± 00 of 4 1.21None
S2 cells (growing)51 ± 24 of 4 5.33Up
Whole fly9 ± 21 of 4

Looking for CG13692-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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