Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13705-RA through 18771 annotations produced 1 hits



(CG13705):

Annotation Number : CG13705
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035582
Gbrowse : chr3L:4896857-4898470 (+) // 100.0 //
Probeset : 1632527_at
Accessions : protein= NP_647938;, nucleotide= NM_139681;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035582.
BDGP gene expression has embryonic in situ data for CG13705: 7 pix of staining in 1 body parts.
BioGrid reports that CG13705 interacts with CG6707 .
VDRC has 2 RNAi stocks for FBgn0035582 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 20 of 4 0.20None
Head14 ± 30 of 4 0.30None
Eye5 ± 20 of 4 0.12None
Thoracicoabdominal ganglion20 ± 32 of 4 0.40None
Salivary gland44 ± 42 of 4 0.89None
Crop31 ± 80 of 4 0.60None
Midgut32 ± 42 of 4 0.60None
Tubule15 ± 20 of 4 0.30Down
Hindgut32 ± 20 of 4 0.60None
Heart12 ± 30 of 4 0.25None
Fat body22 ± 110 of 4 0.45None
Ovary10 ± 20 of 4 0.20None
Testis22 ± 13 of 4 0.40None
Male accessory glands43 ± 44 of 4 0.90None
Virgin spermatheca26 ± 30 of 4 0.52None
Mated spermatheca30 ± 21 of 4 0.60None
Adult carcass24 ± 60 of 4 0.50None
Larval CNS10 ± 21 of 4 0.20None
Larval Salivary gland28 ± 81 of 4 0.56None
Larval midgut26 ± 32 of 4 0.53None
Larval tubule9 ± 30 of 4 0.20None
Larval hindgut98 ± 234 of 4 1.95None
Larval fat body26 ± 40 of 4 0.50None
Larval trachea171 ± 394 of 4 3.40Up
Larval carcass1757 ± 4374 of 434.89Up
S2 cells (growing)25 ± 12 of 4 0.50None
Whole fly50 ± 193 of 4

Looking for CG13705-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime