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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1371-RA through 18771 annotations produced 1 hits



(CG1371):

Annotation Number : CG1371
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033482
Gbrowse : chr2R:5958475-5963147 (-) // 100.0 //
Probeset : 1641435_at
Accessions : protein= NP_610551;, nucleotide= NM_136707;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from elec
FlyMine data for FBgn0033482.
BDGP gene expression has embryonic in situ data for CG1371: 15 pix of staining in 13 body parts.
VDRC has 1 RNAi stocks for FBgn0033482 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain297 54 of 4 1.10Up
Head187 34 of 4 0.70Down
Eye255 124 of 4 0.97None
Thoracicoabdominal ganglion360 34 of 4 1.40Up
Salivary gland229 224 of 4 0.87None
Crop207 164 of 4 0.80Down
Midgut303 164 of 4 1.20None
Tubule315 174 of 4 1.20Up
Hindgut213 44 of 4 0.80Down
Heart261 104 of 4 0.99None
Fat body325 224 of 4 1.24Up
Ovary349 74 of 4 1.30Up
Testis184 84 of 4 0.70Down
Male accessory glands279 144 of 4 1.10None
Virgin spermatheca212 44 of 4 0.81Down
Mated spermatheca242 134 of 4 0.92None
Adult carcass236 134 of 4 0.90None
Larval CNS385 174 of 4 1.47Up
Larval Salivary gland527 324 of 4 2.00Up
Larval midgut262 174 of 4 1.00None
Larval tubule280 124 of 4 1.10None
Larval hindgut391 184 of 4 1.49Up
Larval fat body319 74 of 4 1.20Up
Larval trachea429 654 of 4 1.63Up
Larval carcass393 254 of 4 1.50Up
S2 cells (growing)776 34 of 4 2.95Up
Whole fly262 54 of 4

Looking for CG1371-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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