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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13721-RA through 18771 annotations produced 1 hits



(CG13721):

Annotation Number : CG13721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035554
Gbrowse : chr3L:4497207-4497658 (-) // 100.0 //
Probeset : 1629099_at
Accessions : protein= NP_647912;, nucleotide= NM_139655;
FlyMine data for FBgn0035554.
BioGrid reports that CG13721 interacts with CG13731 CG4027 CG4312 .
VDRC has 4 RNAi stocks for FBgn0035554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.40None
Head2 00 of 4 0.50None
Eye2 10 of 4 0.53None
Thoracicoabdominal ganglion5 10 of 4 1.20None
Salivary gland8 50 of 4 1.85None
Crop1 00 of 4 0.30None
Midgut3 10 of 4 0.80None
Tubule4 00 of 4 0.90None
Hindgut4 20 of 4 1.10None
Heart1 00 of 4 0.23None
Fat body4 20 of 4 0.97None
Ovary1 00 of 4 0.30None
Testis2 10 of 4 0.50None
Male accessory glands7 20 of 4 1.70None
Virgin spermatheca6 10 of 4 1.37None
Mated spermatheca6 10 of 4 1.39None
Adult carcass6 30 of 4 1.40None
Larval CNS1 10 of 4 0.42None
Larval Salivary gland3 00 of 4 0.77None
Larval midgut4 20 of 4 0.91None
Larval tubule3 00 of 4 0.70None
Larval hindgut5 10 of 4 1.12None
Larval fat body4 10 of 4 1.00None
Larval trachea9 81 of 4 2.06None
Larval carcass10 40 of 4 2.30None
S2 cells (growing)4 10 of 4 0.96None
Whole fly4 10 of 4

Looking for CG13721-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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