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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13724-RA through 18771 annotations produced 1 hits



(CG13724):

Annotation Number : CG13724
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036707
Gbrowse : chr3L:17315940-17317593 (+) // 100.0 //
Probeset : 1625216_at
Accessions : protein= NP_648966;, nucleotide= NM_140709;
FlyMine data for FBgn0036707.
VDRC has 2 RNAi stocks for FBgn0036707 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.90None
Head1 ± 00 of 4 1.80None
Eye1 ± 00 of 4 1.29None
Thoracicoabdominal ganglion1 ± 00 of 4 1.60Up
Salivary gland3 ± 00 of 4 4.05Up
Crop1 ± 00 of 4 1.40None
Midgut3 ± 00 of 4 3.40Up
Tubule2 ± 00 of 4 2.60Up
Hindgut1 ± 00 of 4 1.80None
Heart0 ± 00 of 4 0.79None
Fat body2 ± 00 of 4 2.37None
Ovary0 ± 00 of 4 0.90None
Testis6 ± 20 of 4 6.40None
Male accessory glands2 ± 00 of 4 2.50None
Virgin spermatheca3 ± 10 of 4 3.87None
Mated spermatheca3 ± 10 of 4 3.13None
Adult carcass2 ± 00 of 4 2.10None
Larval CNS1 ± 00 of 4 1.05None
Larval Salivary gland3 ± 10 of 4 3.13None
Larval midgut1 ± 00 of 4 1.55None
Larval tubule2 ± 00 of 4 2.20None
Larval hindgut1 ± 00 of 4 1.84None
Larval fat body2 ± 00 of 4 2.70Up
Larval trachea0 ± 00 of 4 0.95None
Larval carcass2 ± 10 of 4 3.03None
S2 cells (growing)1 ± 00 of 4 1.39None
Whole fly1 ± 00 of 4

Looking for CG13724-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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