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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1373-RA through 18771 annotations produced 1 hits



Cecropin (CecC):

Annotation Number : CG1373
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000279
Gbrowse : chr3R:26042205-26042659 (+) // 100.0 //
Probeset : 1632719_at
Accessions : protein= NP_524591;, nucleotide= NM_079852;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
FlyMine data for FBgn0000279.
BDGP gene expression has embryonic in situ data for CecC: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 42 of 4 1.20None
Head69 403 of 4 9.60None
Eye15 72 of 4 2.12None
Thoracicoabdominal ganglion3 10 of 4 0.50None
Salivary gland454 1274 of 462.64Up
Crop8 21 of 4 1.20None
Midgut2 10 of 4 0.30None
Tubule3 10 of 4 0.50Down
Hindgut5 21 of 4 0.80None
Heart65 124 of 4 9.08Up
Fat body19 211 of 4 2.64None
Ovary2 10 of 4 0.30None
Testis1 00 of 4 0.20None
Male accessory glands7 10 of 4 1.10None
Virgin spermatheca17 141 of 4 2.39None
Mated spermatheca9 32 of 4 1.28None
Adult carcass29 132 of 4 4.00None
Larval CNS24 54 of 4 3.44Up
Larval Salivary gland1635 3994 of 4225.56Up
Larval midgut11 31 of 4 1.59None
Larval tubule17 132 of 4 2.40None
Larval hindgut10 22 of 4 1.45None
Larval fat body34 172 of 4 4.70None
Larval trachea8 42 of 4 1.20None
Larval carcass18 22 of 4 2.51Up
S2 cells (growing)97 54 of 413.49Up
Whole fly7 31 of 4

Looking for CG1373-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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