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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13732-RA through 18771 annotations produced 1 hits



CG13732 (qjt):

Annotation Number : CG13732
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036730
Gbrowse : chr3L:17472461-17473163 (+) // 100.0 //
Probeset : 1624015_at
Accessions : protein= NP_648987;, nucleotide= NM_140730;
FlyMine data for FBgn0036730.
VDRC has 1 RNAi stocks for FBgn0036730 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.20Down
Head7 ± 10 of 4 0.30Down
Eye5 ± 10 of 4 0.21Down
Thoracicoabdominal ganglion10 ± 21 of 4 0.40Down
Salivary gland19 ± 41 of 4 0.79None
Crop11 ± 10 of 4 0.50Down
Midgut9 ± 21 of 4 0.40Down
Tubule8 ± 00 of 4 0.40Down
Hindgut6 ± 20 of 4 0.30Down
Heart1 ± 00 of 4 0.07Down
Fat body10 ± 71 of 4 0.41Down
Ovary6 ± 10 of 4 0.30Down
Testis231 ± 174 of 4 9.60Up
Male accessory glands5 ± 20 of 4 0.20Down
Virgin spermatheca13 ± 22 of 4 0.55Down
Mated spermatheca17 ± 24 of 4 0.71None
Adult carcass7 ± 10 of 4 0.30Down
Larval CNS15 ± 24 of 4 0.66Down
Larval Salivary gland12 ± 30 of 4 0.49Down
Larval midgut4 ± 10 of 4 0.18Down
Larval tubule6 ± 10 of 4 0.30Down
Larval hindgut7 ± 11 of 4 0.29Down
Larval fat body24 ± 63 of 4 1.00None
Larval trachea0 ± 00 of 4 0.03Down
Larval carcass4 ± 10 of 4 0.17Down
S2 cells (growing)14 ± 13 of 4 0.59Down
Whole fly24 ± 14 of 4

Looking for CG13732-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime