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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13733-RA through 18771 annotations produced 1 hits



(CG13733):

Annotation Number : CG13733
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036729
Gbrowse : chr3L:17470886-17472026 (-) // 100.0 //
Probeset : 1639891_at
Accessions : protein= NP_648986;, nucleotide= NM_140729;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036729.
BioGrid reports that CG13733 interacts with CG15059 CG3342 CG9893 CG14005 CG14625 CG31357 CG3661 CG4863 CG5303 CG6276 CG6333 CG9795 .
VDRC has 1 RNAi stocks for FBgn0036729 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye2 10 of 4 0.03Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland2 00 of 4 0.03Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body2 00 of 4 0.03Down
Ovary2 10 of 4 0.00Down
Testis1219 534 of 413.50Up
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca2 10 of 4 0.03Down
Adult carcass2 00 of 4 0.00Down
Larval CNS1 00 of 4 0.02Down
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut1 00 of 4 0.02Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body100 513 of 4 1.10None
Larval trachea5 80 of 4 0.06Down
Larval carcass4 20 of 4 0.05Down
S2 cells (growing)6 10 of 4 0.08Down
Whole fly90 74 of 4

Looking for CG13733-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime