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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13759-RA through 18771 annotations produced 1 hits



(CG13759):

Annotation Number : CG13759
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040376
Gbrowse : chrX:2476736-2477858 (+) // 100.0 //
Probeset : 1641362_at
Accessions : protein= NP_570009;, nucleotide= NM_130653;
Interpro : 0008080 // N-acetyltransferase activity // inferred from sequence or structural similarity /// 0008415 // acyltransferas
FlyMine data for FBgn0040376.
VDRC has 1 RNAi stocks for FBgn0040376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 54 of 4 1.50Up
Head24 34 of 4 0.30Down
Eye2 10 of 4 0.03Down
Thoracicoabdominal ganglion82 34 of 4 1.10None
Salivary gland2 00 of 4 0.03Down
Crop8 10 of 4 0.10Down
Midgut3 10 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut7 10 of 4 0.10Down
Heart5 10 of 4 0.07Down
Fat body5 30 of 4 0.07Down
Ovary1 00 of 4 0.00Down
Testis51 64 of 4 0.70Down
Male accessory glands5237 1604 of 469.30Up
Virgin spermatheca3 10 of 4 0.04Down
Mated spermatheca2 00 of 4 0.03Down
Adult carcass12 30 of 4 0.20Down
Larval CNS91 94 of 4 1.21None
Larval Salivary gland5 10 of 4 0.07Down
Larval midgut3 00 of 4 0.04Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut5 10 of 4 0.08Down
Larval fat body8 30 of 4 0.10Down
Larval trachea3 20 of 4 0.04Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)5 00 of 4 0.07Down
Whole fly75 44 of 4

Looking for CG13759-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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