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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13762-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG13762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:2516224-2518608 (-) // 100.0 //
Probeset : 1623613_at
Accessions : protein= NP_570013;, nucleotide= NM_130657;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005262 // calcium channel activity // inferred from sequence or structural similarity /// 0005509 // calcium ion bindin
Homophila reports that CG13762 is a close match (9e-15) to human gene PKD2;PKD4 (NP_000288), a gene associated with Polycystic kidney disease, adult, type II (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 1.80Up
Head7 ± 03 of 4 0.90None
Eye5 ± 10 of 4 0.55None
Thoracicoabdominal ganglion19 ± 14 of 4 2.10Up
Salivary gland9 ± 30 of 4 1.02None
Crop4 ± 00 of 4 0.50Down
Midgut5 ± 10 of 4 0.60None
Tubule4 ± 00 of 4 0.50Down
Hindgut4 ± 00 of 4 0.50Down
Heart4 ± 00 of 4 0.46Down
Fat body6 ± 30 of 4 0.68None
Ovary2 ± 00 of 4 0.30Down
Testis125 ± 24 of 413.80Up
Male accessory glands22 ± 43 of 4 2.50Up
Virgin spermatheca5 ± 11 of 4 0.55None
Mated spermatheca5 ± 00 of 4 0.57Down
Adult carcass6 ± 10 of 4 0.70None
Larval CNS4 ± 12 of 4 0.52Down
Larval Salivary gland3 ± 10 of 4 0.37Down
Larval midgut4 ± 10 of 4 0.54None
Larval tubule5 ± 10 of 4 0.60None
Larval hindgut2 ± 10 of 4 0.27Down
Larval fat body30 ± 83 of 4 3.30None
Larval trachea2 ± 20 of 4 0.30Down
Larval carcass5 ± 10 of 4 0.65None
S2 cells (growing)7 ± 13 of 4 0.82None
Whole fly9 ± 14 of 4

Looking for CG13762-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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