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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13766-RA through 18771 annotations produced 1 hits



(CG13766):

Annotation Number : CG13766
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031834
Gbrowse : chr2L:6565169-6566117 (-) // 100.0 //
Probeset : 1638245_at
Accessions : protein= NP_609050;, nucleotide= NM_135206;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0031834.
TRiP has 1 RNAi stocks for FBgn0031834 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031834 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 34 of 4 1.70Up
Head21 ± 13 of 4 0.70None
Eye19 ± 23 of 4 0.62None
Thoracicoabdominal ganglion32 ± 53 of 4 1.00None
Salivary gland8 ± 10 of 4 0.27Down
Crop18 ± 23 of 4 0.60None
Midgut32 ± 30 of 4 1.00None
Tubule13 ± 00 of 4 0.40Down
Hindgut20 ± 14 of 4 0.70None
Heart16 ± 14 of 4 0.54Down
Fat body10 ± 41 of 4 0.32Down
Ovary73 ± 24 of 4 2.40Up
Testis16 ± 14 of 4 0.50Down
Male accessory glands7 ± 10 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca3 ± 10 of 4 0.10Down
Adult carcass11 ± 20 of 4 0.40Down
Larval CNS26 ± 54 of 4 0.85None
Larval Salivary gland19 ± 21 of 4 0.63None
Larval midgut15 ± 10 of 4 0.49Down
Larval tubule35 ± 24 of 4 1.20None
Larval hindgut10 ± 11 of 4 0.33Down
Larval fat body18 ± 32 of 4 0.60None
Larval trachea16 ± 53 of 4 0.53Down
Larval carcass10 ± 21 of 4 0.34Down
S2 cells (growing)35 ± 34 of 4 1.14None
Whole fly30 ± 44 of 4

Looking for CG13766-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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