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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13775-RA through 18771 annotations produced 1 hits



(CG13775):

Annotation Number : CG13775
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031874
Gbrowse : chr2L:6954584-6956872 (-) // 100.0 //
Probeset : 1635759_at
Accessions : protein= NP_609087;, nucleotide= NM_135243;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0031874.
VDRC has 1 RNAi stocks for FBgn0031874 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 04 of 4 1.30None
Head17 12 of 4 1.00None
Eye10 12 of 4 0.59Down
Thoracicoabdominal ganglion20 14 of 4 1.20None
Salivary gland15 40 of 4 0.83None
Crop17 20 of 4 1.00None
Midgut26 22 of 4 1.50Up
Tubule19 03 of 4 1.10Up
Hindgut16 12 of 4 0.90None
Heart10 10 of 4 0.60Down
Fat body16 31 of 4 0.94None
Ovary34 14 of 4 1.90Up
Testis6 00 of 4 0.30Down
Male accessory glands22 11 of 4 1.20None
Virgin spermatheca7 20 of 4 0.43Down
Mated spermatheca13 10 of 4 0.75None
Adult carcass20 50 of 4 1.20None
Larval CNS29 24 of 4 1.63Up
Larval Salivary gland12 10 of 4 0.68None
Larval midgut20 31 of 4 1.16None
Larval tubule21 21 of 4 1.20None
Larval hindgut15 13 of 4 0.87None
Larval fat body14 20 of 4 0.80None
Larval trachea16 13 of 4 0.89None
Larval carcass15 20 of 4 0.88None
S2 cells (growing)21 13 of 4 1.22None
Whole fly18 22 of 4

Looking for CG13775-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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