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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13780-RA through 18771 annotations produced 1 hits

VEGF-related factor 2 (Pvf2):

Annotation Number : CG13780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031888
Gbrowse : chr2L:7069577-7084634 (-) // 100.0 //
Probeset : 1630642_at
Accessions : protein= NP_523499;, nucleotide= NM_078775;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005172 // vascular endothelial growth factor receptor binding // inferred from sequence or structural similarity /// 00
FlyMine data for FBgn0031888.
BDGP gene expression has embryonic in situ data for Pvf2: 41 pix of staining in 12 body parts.
BioGrid reports that CG13780 interacts with CG17666 CG17934 CG4328 Dmel CG34168 CG7103 CG31629 .
VDRC has 3 RNAi stocks for FBgn0031888 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 04 of 4 0.70None
Head15 14 of 4 1.70None
Eye9 04 of 4 1.06None
Thoracicoabdominal ganglion2 00 of 4 0.30None
Salivary gland6 31 of 4 0.76None
Crop25 24 of 4 2.90Up
Midgut7 13 of 4 0.90None
Tubule18 62 of 4 2.00None
Hindgut15 04 of 4 1.80None
Heart8 04 of 4 0.97None
Fat body6 22 of 4 0.73None
Ovary1 00 of 4 0.20None
Testis18 04 of 4 2.10Up
Male accessory glands4 11 of 4 0.40None
Virgin spermatheca10 14 of 4 1.22None
Mated spermatheca13 04 of 4 1.52None
Adult carcass16 12 of 4 1.80None
Larval CNS38 54 of 4 4.30Up
Larval Salivary gland84 84 of 4 9.41Up
Larval midgut10 13 of 4 1.13None
Larval tubule35 54 of 4 3.90Up
Larval hindgut22 24 of 4 2.47Up
Larval fat body10 13 of 4 1.20None
Larval trachea133 164 of 414.86Up
Larval carcass50 84 of 4 5.65Up
S2 cells (growing)1509 834 of 4168.14Up
Whole fly9 24 of 4

Looking for CG13780-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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