FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13784-RB through 18771 annotations produced 2 hits

(CG13784):

Annotation Number : CG13784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031897
Gbrowse : chr2L:7218642-7220029 (-) // 100.0 //
Probeset : 1623893_at
Accessions : protein= NP_001036343; /// NP_723261;, nucleotide= NM_001042878; /// NM_164742;
FlyMine data for FBgn0031897.
BDGP gene expression has embryonic in situ data for CG13784: 21 pix of staining in 12 body parts.
BioGrid reports that CG13784 interacts with CG13889 CG8219 .
TRiP has 1 RNAi stocks for FBgn0031897 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031897 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	2 of 4	0.40	None
Head	6 ± 0	3 of 4	0.50	None
Eye	4 ± 0	1 of 4	0.36	None
Thoracicoabdominal ganglion	5 ± 1	2 of 4	0.50	None
Salivary gland	14 ± 2	1 of 4	1.27	None
Crop	6 ± 0	3 of 4	0.50	None
Midgut	6 ± 1	4 of 4	0.60	None
Tubule	7 ± 0	1 of 4	0.60	Down
Hindgut	6 ± 1	4 of 4	0.60	None
Heart	7 ± 0	4 of 4	0.63	None
Fat body	10 ± 2	4 of 4	0.91	None
Ovary	4 ± 1	3 of 4	0.30	None
Testis	18 ± 4	4 of 4	1.60	None
Male accessory glands	6 ± 0	1 of 4	0.50	None
Virgin spermatheca	8 ± 2	3 of 4	0.71	None
Mated spermatheca	5 ± 0	3 of 4	0.49	None
Adult carcass	8 ± 1	0 of 4	0.70	None
Larval CNS	3 ± 1	3 of 4	0.29	None
Larval Salivary gland	8 ± 1	4 of 4	0.72	None
Larval midgut	6 ± 1	3 of 4	0.53	None
Larval tubule	5 ± 0	3 of 4	0.50	None
Larval hindgut	5 ± 1	3 of 4	0.51	None
Larval fat body	11 ± 2	2 of 4	1.00	None
Larval trachea	5 ± 0	3 of 4	0.48	None
Larval carcass	4 ± 1	2 of 4	0.42	None
S2 cells (growing)	16 ± 1	4 of 4	1.44	None
Whole fly	11 ± 3	3 of 4

(CG13784):

Annotation Number : CG13784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031897
Gbrowse : chr2L:7218642-7220029 (-) // 100.0 //
Probeset : 1639508_a_at
Accessions : protein= NP_001036343; /// NP_723261;, nucleotide= NM_001042878; /// NM_164742;
FlyMine data for FBgn0031897.
BDGP gene expression has embryonic in situ data for CG13784: 21 pix of staining in 12 body parts.
BioGrid reports that CG13784 interacts with CG13889 CG8219 .
TRiP has 1 RNAi stocks for FBgn0031897 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031897 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 1	4 of 4	0.30	Down
Head	29 ± 7	3 of 4	1.00	None
Eye	1 ± 0	0 of 4	0.06	Down
Thoracicoabdominal ganglion	6 ± 1	0 of 4	0.20	Down
Salivary gland	5 ± 1	0 of 4	0.18	Down
Crop	14 ± 3	1 of 4	0.50	Down
Midgut	34 ± 3	0 of 4	1.20	None
Tubule	6 ± 0	0 of 4	0.20	Down
Hindgut	15 ± 1	2 of 4	0.50	Down
Heart	13 ± 1	0 of 4	0.46	Down
Fat body	33 ± 15	4 of 4	1.17	None
Ovary	10 ± 2	3 of 4	0.40	Down
Testis	62 ± 1	4 of 4	2.20	Up
Male accessory glands	4 ± 2	0 of 4	0.20	Down
Virgin spermatheca	10 ± 2	2 of 4	0.37	Down
Mated spermatheca	16 ± 4	2 of 4	0.57	None
Adult carcass	38 ± 3	4 of 4	1.40	Up
Larval CNS	2 ± 1	0 of 4	0.08	Down
Larval Salivary gland	10 ± 3	1 of 4	0.35	Down
Larval midgut	10 ± 1	0 of 4	0.37	Down
Larval tubule	24 ± 3	3 of 4	0.90	None
Larval hindgut	4 ± 1	0 of 4	0.14	Down
Larval fat body	56 ± 4	4 of 4	2.00	Up
Larval trachea	4 ± 1	0 of 4	0.15	Down
Larval carcass	6 ± 1	0 of 4	0.21	Down
S2 cells (growing)	31 ± 3	3 of 4	1.11	None
Whole fly	28 ± 2	4 of 4

Looking for CG13784-RB. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720