FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13787-RA through 18771 annotations produced 1 hits

Gustatory receptor 28a (Gr28a):

Annotation Number : CG13787
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041247
Gbrowse : chr2L:7452543-7454169 (-) // 100.0 //
Probeset : 1624034_at
Accessions : protein= NP_523504;, nucleotide= NM_078780;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041247.
VDRC has 3 RNAi stocks for FBgn0041247 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	2 of 4	0.90	None
Head	5 ± 1	1 of 4	0.80	None
Eye	3 ± 2	1 of 4	0.49	None
Thoracicoabdominal ganglion	9 ± 2	3 of 4	1.50	None
Salivary gland	15 ± 1	1 of 4	2.36	Up
Crop	9 ± 2	2 of 4	1.40	None
Midgut	10 ± 3	2 of 4	1.60	None
Tubule	5 ± 0	0 of 4	0.80	None
Hindgut	7 ± 1	1 of 4	1.10	None
Heart	3 ± 1	0 of 4	0.54	None
Fat body	8 ± 3	1 of 4	1.21	None
Ovary	3 ± 0	0 of 4	0.50	Down
Testis	12 ± 1	4 of 4	1.90	Up
Male accessory glands	13 ± 1	2 of 4	2.10	Up
Virgin spermatheca	6 ± 0	2 of 4	0.99	None
Mated spermatheca	6 ± 1	0 of 4	0.90	None
Adult carcass	7 ± 2	0 of 4	1.10	None
Larval CNS	4 ± 1	4 of 4	0.72	None
Larval Salivary gland	6 ± 2	0 of 4	1.01	None
Larval midgut	10 ± 1	0 of 4	1.50	None
Larval tubule	10 ± 1	2 of 4	1.50	None
Larval hindgut	6 ± 1	3 of 4	0.89	None
Larval fat body	10 ± 3	0 of 4	1.60	None
Larval trachea	3 ± 2	1 of 4	0.48	None
Larval carcass	4 ± 0	0 of 4	0.69	None
S2 cells (growing)	4 ± 0	0 of 4	0.63	None
Whole fly	6 ± 1	3 of 4

Looking for CG13787-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720