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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1379-RA through 18771 annotations produced 2 hits



CG34145 (RunxA):

Annotation Number : CG15453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083981
Gbrowse : chrX:20463188-20464941 (-) // 100.0 //
Probeset : 1637013_at
Accessions : protein= NP_001036285;, nucleotide= NM_001042820;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0083981.
TRiP has 1 RNAi stocks for FBgn0083981 available for purchase.
VDRC has 4 RNAi stocks for FBgn0083981 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 13 of 4 0.90None
Head9 13 of 4 1.00None
Eye2 00 of 4 0.24Down
Thoracicoabdominal ganglion10 13 of 4 1.10None
Salivary gland13 10 of 4 1.44None
Crop8 21 of 4 0.90None
Midgut17 23 of 4 1.80Up
Tubule10 00 of 4 1.00None
Hindgut10 23 of 4 1.10None
Heart2 10 of 4 0.22Down
Fat body16 20 of 4 1.73Up
Ovary3 00 of 4 0.30Down
Testis8 10 of 4 0.90None
Male accessory glands12 11 of 4 1.30None
Virgin spermatheca6 10 of 4 0.66None
Mated spermatheca8 10 of 4 0.86None
Adult carcass14 30 of 4 1.50None
Larval CNS4 01 of 4 0.49None
Larval Salivary gland4 10 of 4 0.45None
Larval midgut17 30 of 4 1.85None
Larval tubule10 02 of 4 1.10None
Larval hindgut4 10 of 4 0.51None
Larval fat body10 50 of 4 1.10None
Larval trachea1 00 of 4 0.10Down
Larval carcass14 00 of 4 1.55None
S2 cells (growing)6 22 of 4 0.73None
Whole fly9 10 of 4



CG34145 (RunxA):

Annotation Number : CG1379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083981
Gbrowse : chrX:20469569-20476509 (-) // 100.0 //
Probeset : 1634677_at
Accessions : protein= NP_001036285;, nucleotide= NM_001042820;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0083981.
TRiP has 1 RNAi stocks for FBgn0083981 available for purchase.
VDRC has 4 RNAi stocks for FBgn0083981 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.80None
Head3 10 of 4 3.20None
Eye1 00 of 4 1.79None
Thoracicoabdominal ganglion1 00 of 4 1.00None
Salivary gland2 10 of 4 2.08None
Crop1 00 of 4 1.40None
Midgut2 10 of 4 2.20None
Tubule1 00 of 4 1.70Up
Hindgut0 00 of 4 0.90None
Heart0 00 of 4 0.58None
Fat body3 20 of 4 4.00None
Ovary0 00 of 4 0.80None
Testis0 00 of 4 0.60None
Male accessory glands4 20 of 4 5.00None
Virgin spermatheca0 00 of 4 0.79None
Mated spermatheca2 10 of 4 2.76None
Adult carcass2 00 of 4 2.70Up
Larval CNS1 10 of 4 1.37None
Larval Salivary gland2 10 of 4 2.47None
Larval midgut2 10 of 4 2.95None
Larval tubule2 10 of 4 2.80None
Larval hindgut0 00 of 4 0.58None
Larval fat body3 10 of 4 3.40None
Larval trachea1 00 of 4 1.39None
Larval carcass1 00 of 4 1.76None
S2 cells (growing)1 00 of 4 1.24None
Whole fly1 00 of 4

Looking for CG1379-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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