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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13807-RA through 18771 annotations produced 1 hits



(CG13807):

Annotation Number : CG13807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035323
Gbrowse : chr3L:2262972-2263546 (+) // 100.0 //
Probeset : 1641462_at
Accessions : protein= NP_647706;, nucleotide= NM_139449;
FlyMine data for FBgn0035323.
VDRC has 5 RNAi stocks for FBgn0035323 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 ± 24 of 4 0.90None
Head134 ± 94 of 4 1.20None
Eye175 ± 104 of 4 1.59Up
Thoracicoabdominal ganglion132 ± 114 of 4 1.20None
Salivary gland305 ± 184 of 4 2.76Up
Crop197 ± 144 of 4 1.80Up
Midgut84 ± 40 of 4 0.80Down
Tubule41 ± 21 of 4 0.40Down
Hindgut182 ± 134 of 4 1.70Up
Heart168 ± 94 of 4 1.52Up
Fat body132 ± 254 of 4 1.20None
Ovary113 ± 34 of 4 1.00None
Testis93 ± 114 of 4 0.80None
Male accessory glands56 ± 50 of 4 0.50Down
Virgin spermatheca105 ± 54 of 4 0.95None
Mated spermatheca101 ± 54 of 4 0.92None
Adult carcass177 ± 134 of 4 1.60Up
Larval CNS109 ± 104 of 4 0.99None
Larval Salivary gland134 ± 114 of 4 1.22None
Larval midgut47 ± 40 of 4 0.43Down
Larval tubule160 ± 34 of 4 1.40Up
Larval hindgut104 ± 94 of 4 0.95None
Larval fat body205 ± 224 of 4 1.90Up
Larval trachea143 ± 94 of 4 1.29Up
Larval carcass113 ± 124 of 4 1.03None
S2 cells (growing)125 ± 134 of 4 1.14None
Whole fly110 ± 44 of 4

Looking for CG13807-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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