FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13822-RA through 18771 annotations produced 1 hits

(CG13822):

Annotation Number : CG13822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039098
Gbrowse : chr3R:19503079-19504145 (+) // 100.0 //
Probeset : 1635936_at
Accessions : protein= NP_651165;, nucleotide= NM_142908;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039098.
BDGP gene expression has embryonic in situ data for CG13822: 27 pix of staining in 4 body parts.
BioGrid reports that CG13822 interacts with CG14317 CG15010 CG17566 CG4217 .
VDRC has 3 RNAi stocks for FBgn0039098 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	194 ± 6	4 of 4	1.40	Up
Head	98 ± 4	4 of 4	0.70	Down
Eye	21 ± 1	4 of 4	0.16	Down
Thoracicoabdominal ganglion	261 ± 10	4 of 4	1.90	Up
Salivary gland	1336 ± 101	4 of 4	9.93	Up
Crop	89 ± 5	4 of 4	0.70	Down
Midgut	29 ± 2	4 of 4	0.20	Down
Tubule	75 ± 17	3 of 4	0.60	Down
Hindgut	58 ± 2	4 of 4	0.40	Down
Heart	219 ± 9	4 of 4	1.63	Up
Fat body	37 ± 8	4 of 4	0.28	Down
Ovary	308 ± 6	4 of 4	2.30	Up
Testis	175 ± 5	4 of 4	1.30	Up
Male accessory glands	922 ± 23	4 of 4	6.90	Up
Virgin spermatheca	62 ± 2	4 of 4	0.46	Down
Mated spermatheca	30 ± 1	4 of 4	0.22	Down
Adult carcass	44 ± 3	4 of 4	0.30	Down
Larval CNS	173 ± 9	4 of 4	1.29	Up
Larval Salivary gland	573 ± 21	4 of 4	4.26	Up
Larval midgut	34 ± 0	4 of 4	0.26	Down
Larval tubule	529 ± 30	4 of 4	3.90	Up
Larval hindgut	199 ± 4	4 of 4	1.48	Up
Larval fat body	1207 ± 168	4 of 4	9.00	Up
Larval trachea	48 ± 6	4 of 4	0.36	Down
Larval carcass	551 ± 43	4 of 4	4.10	Up
S2 cells (growing)	70 ± 3	4 of 4	0.52	Down
Whole fly	134 ± 9	4 of 4

Looking for CG13822-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720