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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13827-RA through 18771 annotations produced 1 hits



(CG13827):

Annotation Number : CG13827
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039068
Gbrowse : chr3R:19084090-19086324 (+) // 100.0 //
Probeset : 1631671_at
Accessions : protein= NP_651137;, nucleotide= NM_142880;
Pathway : 0005778 // peroxisomal membrane // inferred from electronic annotation
FlyMine data for FBgn0039068.
BDGP gene expression has embryonic in situ data for CG13827: 9 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0039068 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 ± 24 of 4 0.60Down
Head81 ± 24 of 4 0.70Down
Eye53 ± 24 of 4 0.46Down
Thoracicoabdominal ganglion71 ± 44 of 4 0.60Down
Salivary gland783 ± 284 of 4 6.75Up
Crop523 ± 224 of 4 4.50Up
Midgut269 ± 14 of 4 2.30Up
Tubule1826 ± 2024 of 415.70Up
Hindgut327 ± 124 of 4 2.80Up
Heart106 ± 64 of 4 0.91None
Fat body93 ± 104 of 4 0.81Down
Ovary96 ± 44 of 4 0.80Down
Testis29 ± 14 of 4 0.30Down
Male accessory glands124 ± 44 of 4 1.10None
Virgin spermatheca103 ± 24 of 4 0.89Down
Mated spermatheca94 ± 64 of 4 0.81Down
Adult carcass89 ± 64 of 4 0.80Down
Larval CNS67 ± 64 of 4 0.59Down
Larval Salivary gland742 ± 644 of 4 6.40Up
Larval midgut283 ± 164 of 4 2.44Up
Larval tubule1432 ± 434 of 412.30Up
Larval hindgut224 ± 264 of 4 1.93Up
Larval fat body129 ± 164 of 4 1.10None
Larval trachea167 ± 154 of 4 1.44Up
Larval carcass262 ± 254 of 4 2.26Up
S2 cells (growing)38 ± 14 of 4 0.33Down
Whole fly116 ± 14 of 4

Looking for CG13827-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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