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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13837-RA through 18771 annotations produced 1 hits



(CG13837):

Annotation Number : CG13837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039042
Gbrowse : chr3R:18869711-18870383 (+) // 100.0 //
Probeset : 1639832_at
Accessions : protein= NP_651113;, nucleotide= NM_142856;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0039042.
VDRC has 4 RNAi stocks for FBgn0039042 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 1.10None
Head5 ± 10 of 4 1.00None
Eye3 ± 00 of 4 0.71None
Thoracicoabdominal ganglion5 ± 10 of 4 1.10None
Salivary gland19 ± 40 of 4 3.67Up
Crop6 ± 10 of 4 1.30None
Midgut12 ± 14 of 4 2.30Up
Tubule7 ± 10 of 4 1.50Up
Hindgut16 ± 14 of 4 3.00Up
Heart2 ± 00 of 4 0.38None
Fat body11 ± 11 of 4 2.16None
Ovary6 ± 10 of 4 1.10None
Testis5 ± 10 of 4 1.00None
Male accessory glands11 ± 30 of 4 2.20None
Virgin spermatheca4 ± 21 of 4 0.91None
Mated spermatheca5 ± 10 of 4 0.96None
Adult carcass12 ± 20 of 4 2.30None
Larval CNS3 ± 10 of 4 0.65None
Larval Salivary gland12 ± 20 of 4 2.31None
Larval midgut20 ± 14 of 4 3.73Up
Larval tubule7 ± 00 of 4 1.40None
Larval hindgut24 ± 44 of 4 4.57Up
Larval fat body11 ± 10 of 4 2.10None
Larval trachea7 ± 11 of 4 1.42None
Larval carcass18 ± 22 of 4 3.40Up
S2 cells (growing)3 ± 00 of 4 0.63None
Whole fly5 ± 20 of 4

Looking for CG13837-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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