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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13845-RA through 18771 annotations produced 1 hits



CG13845 (CG34376):

Annotation Number : CG13845
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085405
Gbrowse : chr3R:18285326-18286222 (+) // 100.0 //
Probeset : 1633067_at
Accessions : protein= NP_001097872; /// NP_732741;, nucleotide= NM_001104402; /// NM_170013;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0085405.
TRiP has 1 RNAi stocks for FBgn0085405 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085405 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 24 of 4 0.40Down
Head160 294 of 4 2.50Up
Eye35 64 of 4 0.55Down
Thoracicoabdominal ganglion24 34 of 4 0.40Down
Salivary gland10 20 of 4 0.16Down
Crop12 10 of 4 0.20Down
Midgut173 64 of 4 2.70Up
Tubule12 03 of 4 0.20Down
Hindgut19 24 of 4 0.30Down
Heart150 164 of 4 2.30Up
Fat body357 584 of 4 5.47Up
Ovary3 10 of 4 0.10Down
Testis2 10 of 4 0.00Down
Male accessory glands7 10 of 4 0.10Down
Virgin spermatheca318 254 of 4 4.87Up
Mated spermatheca194 184 of 4 2.98Up
Adult carcass207 74 of 4 3.20Up
Larval CNS14 24 of 4 0.22Down
Larval Salivary gland10 22 of 4 0.16Down
Larval midgut110 64 of 4 1.69Up
Larval tubule10 13 of 4 0.20Down
Larval hindgut14 04 of 4 0.22Down
Larval fat body446 294 of 4 6.80Up
Larval trachea10 00 of 4 0.16Down
Larval carcass8 20 of 4 0.12Down
S2 cells (growing)29 24 of 4 0.46Down
Whole fly65 94 of 4

Looking for CG13845-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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