FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13848-RA through 18771 annotations produced 1 hits

CG13848 (pinta):

Annotation Number : CG13848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038966
Gbrowse : chr3R:18249026-18250447 (-) // 100.0 //
Probeset : 1622896_at
Accessions : protein= NP_651042;, nucleotide= NM_142785;
Interpro : 0005501 // retinoid binding // inferred from direct assay /// 0008431 // vitamin E binding // inferred from sequence or
FlyMine data for FBgn0038966.
BDGP gene expression has embryonic in situ data for CG13848: 8 pix of staining in 2 body parts.
Homophila reports that CG13848 is a close match (1e-13) to human gene AVED;TTP1;TTPA (NP_000361), a gene associated with Ataxia with isolated vitamin E deficiency, 277460 (3).
VDRC has 1 RNAi stocks for FBgn0038966 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	27 ± 0	4 of 4	0.30	Down
Head	221 ± 4	4 of 4	2.70	Up
Eye	593 ± 81	4 of 4	7.26	Up
Thoracicoabdominal ganglion	31 ± 3	4 of 4	0.40	Down
Salivary gland	23 ± 2	2 of 4	0.29	Down
Crop	65 ± 4	4 of 4	0.80	Down
Midgut	142 ± 6	4 of 4	1.70	Up
Tubule	25 ± 1	4 of 4	0.30	Down
Hindgut	54 ± 6	4 of 4	0.70	Down
Heart	293 ± 9	4 of 4	3.58	Up
Fat body	276 ± 41	4 of 4	3.38	Up
Ovary	90 ± 4	4 of 4	1.10	None
Testis	24 ± 1	4 of 4	0.30	Down
Male accessory glands	25 ± 3	2 of 4	0.30	Down
Virgin spermatheca	81 ± 4	4 of 4	1.00	None
Mated spermatheca	102 ± 4	4 of 4	1.25	Up
Adult carcass	176 ± 2	4 of 4	2.20	Up
Larval CNS	23 ± 3	4 of 4	0.28	Down
Larval Salivary gland	25 ± 2	4 of 4	0.31	Down
Larval midgut	243 ± 48	4 of 4	2.98	Up
Larval tubule	277 ± 3	4 of 4	3.40	Up
Larval hindgut	59 ± 7	4 of 4	0.73	Down
Larval fat body	81 ± 4	4 of 4	1.00	None
Larval trachea	102 ± 11	4 of 4	1.26	Up
Larval carcass	42 ± 6	4 of 4	0.52	Down
S2 cells (growing)	107 ± 7	4 of 4	1.31	Up
Whole fly	81 ± 3	4 of 4

Looking for CG13848-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720