FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13852-RA through 18771 annotations produced 1 hits

mob as tumor suppressor (mats):

Annotation Number : CG13852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038965
Gbrowse : chr3R:18246876-18248568 (+) // 100.0 //
Probeset : 1632919_at
Accessions : protein= NP_651041;, nucleotide= NM_142784;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electro
FlyMine data for FBgn0038965.
BDGP gene expression has embryonic in situ data for CG13852: 18 pix of staining in 1 body parts.
BioGrid reports that CG13852 interacts with CG16899 CG8637 CG7001 .
TRiP has 2 RNAi stocks for FBgn0038965 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038965 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	67 ± 2	4 of 4	0.40	Down
Head	75 ± 6	4 of 4	0.40	Down
Eye	71 ± 1	4 of 4	0.38	Down
Thoracicoabdominal ganglion	50 ± 5	4 of 4	0.30	Down
Salivary gland	83 ± 3	4 of 4	0.44	Down
Crop	133 ± 11	4 of 4	0.70	Down
Midgut	86 ± 4	4 of 4	0.50	Down
Tubule	76 ± 4	4 of 4	0.40	Down
Hindgut	82 ± 2	4 of 4	0.40	Down
Heart	131 ± 11	4 of 4	0.69	Down
Fat body	88 ± 12	4 of 4	0.46	Down
Ovary	291 ± 4	4 of 4	1.50	Up
Testis	178 ± 6	4 of 4	0.90	None
Male accessory glands	103 ± 1	4 of 4	0.50	Down
Virgin spermatheca	72 ± 2	4 of 4	0.38	Down
Mated spermatheca	68 ± 6	4 of 4	0.36	Down
Adult carcass	72 ± 2	4 of 4	0.40	Down
Larval CNS	138 ± 11	4 of 4	0.72	Down
Larval Salivary gland	156 ± 9	4 of 4	0.82	Down
Larval midgut	99 ± 11	4 of 4	0.52	Down
Larval tubule	224 ± 2	4 of 4	1.20	Up
Larval hindgut	89 ± 4	4 of 4	0.47	Down
Larval fat body	134 ± 5	4 of 4	0.70	Down
Larval trachea	129 ± 3	4 of 4	0.68	Down
Larval carcass	103 ± 14	4 of 4	0.54	Down
S2 cells (growing)	90 ± 1	4 of 4	0.47	Down
Whole fly	191 ± 6	4 of 4

Looking for CG13852-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720