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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13856-RA through 18771 annotations produced 1 hits


Annotation Number : CG13856
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038959
Gbrowse : chr3R:18230168-18230738 (+) // 100.0 //
Probeset : 1636383_at
Accessions : protein= NP_651036;, nucleotide= NM_142779;
FlyMine data for FBgn0038959.
VDRC has 1 RNAi stocks for FBgn0038959 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 11 of 4 0.50Down
Head104 44 of 4 6.20Up
Eye287 64 of 417.09Up
Thoracicoabdominal ganglion4 20 of 4 0.20Down
Salivary gland1 00 of 4 0.07Down
Crop6 10 of 4 0.40Down
Midgut6 20 of 4 0.40Down
Tubule7 10 of 4 0.40Down
Hindgut5 20 of 4 0.40Down
Heart2 10 of 4 0.15Down
Fat body11 60 of 4 0.70None
Ovary2 00 of 4 0.10Down
Testis3 00 of 4 0.20Down
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca33 24 of 4 1.97Up
Mated spermatheca28 34 of 4 1.72Up
Adult carcass45 54 of 4 2.70Up
Larval CNS9 22 of 4 0.56Down
Larval Salivary gland6 10 of 4 0.39Down
Larval midgut1 00 of 4 0.07Down
Larval tubule4 10 of 4 0.30Down
Larval hindgut12 32 of 4 0.73None
Larval fat body5 20 of 4 0.30Down
Larval trachea38 421 of 4 2.30None
Larval carcass36 143 of 4 2.18None
S2 cells (growing)2 10 of 4 0.12Down
Whole fly16 04 of 4

Looking for CG13856-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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