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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13857-RA through 18771 annotations produced 1 hits



/// /// (CG13857 /// DmauCG13857 /// DsimCG13857):

Annotation Number : CG13857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038958
Gbrowse : chr3R:18218211-18219240 (-) // 100.0 //
Probeset : 1633887_at
Accessions : protein= NP_651035;, nucleotide= NM_142778;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038958.
BioGrid reports that CG13857 interacts with CG14119 CG17777 CG5422 Dmel CG34354 CG5829 .
VDRC has 2 RNAi stocks for FBgn0038958 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.90None
Head9 ± 12 of 4 1.60None
Eye6 ± 11 of 4 1.17None
Thoracicoabdominal ganglion4 ± 10 of 4 0.70None
Salivary gland8 ± 40 of 4 1.50None
Crop8 ± 11 of 4 1.60None
Midgut10 ± 30 of 4 1.90None
Tubule2 ± 00 of 4 0.50Down
Hindgut7 ± 31 of 4 1.30None
Heart3 ± 00 of 4 0.55Down
Fat body5 ± 20 of 4 0.88None
Ovary0 ± 00 of 4 0.10Down
Testis6 ± 11 of 4 1.20None
Male accessory glands10 ± 20 of 4 1.90None
Virgin spermatheca1 ± 00 of 4 0.31Down
Mated spermatheca3 ± 00 of 4 0.62None
Adult carcass10 ± 20 of 4 1.90None
Larval CNS4 ± 20 of 4 0.86None
Larval Salivary gland5 ± 20 of 4 0.89None
Larval midgut9 ± 10 of 4 1.65Up
Larval tubule4 ± 20 of 4 0.70None
Larval hindgut8 ± 00 of 4 1.40None
Larval fat body4 ± 30 of 4 0.80None
Larval trachea5 ± 30 of 4 1.02None
Larval carcass8 ± 21 of 4 1.42None
S2 cells (growing)3 ± 10 of 4 0.62None
Whole fly5 ± 00 of 4

Looking for CG13857-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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