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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13869-RA through 18771 annotations produced 1 hits



(CG13869):

Annotation Number : CG13869
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034486
Gbrowse : chr2R:16126074-16126605 (-) // 100.0 //
Probeset : 1635194_at
Accessions : protein= NP_611458;, nucleotide= NM_137614;
FlyMine data for FBgn0034486.
BioGrid reports that CG13869 interacts with Dmel CG14425 .
VDRC has 2 RNAi stocks for FBgn0034486 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 21 of 4 3.70None
Head8 10 of 4 3.80Up
Eye28 14 of 412.63Up
Thoracicoabdominal ganglion13 22 of 4 6.00Up
Salivary gland3 00 of 4 1.48None
Crop5 10 of 4 2.60None
Midgut4 10 of 4 1.80None
Tubule1 00 of 4 0.50Down
Hindgut8 00 of 4 3.80Up
Heart1 00 of 4 0.64None
Fat body1 00 of 4 0.73None
Ovary1 00 of 4 0.80None
Testis3 10 of 4 1.50None
Male accessory glands4 10 of 4 1.90None
Virgin spermatheca2 00 of 4 1.04None
Mated spermatheca1 00 of 4 0.54None
Adult carcass3 00 of 4 1.60None
Larval CNS1 10 of 4 0.71None
Larval Salivary gland1 00 of 4 0.72None
Larval midgut1 00 of 4 0.64None
Larval tubule1 00 of 4 0.60None
Larval hindgut24 43 of 410.64Up
Larval fat body3 00 of 4 1.30None
Larval trachea3 30 of 4 1.56None
Larval carcass2 00 of 4 1.04None
S2 cells (growing)1 00 of 4 0.81None
Whole fly2 00 of 4

Looking for CG13869-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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