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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13873-RA through 18771 annotations produced 1 hits



Odorant-binding protein 56g (Obp56g):

Annotation Number : CG13873
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034474
Gbrowse : chr2R:15671061-15671525 (-) // 100.0 //
Probeset : 1628792_at
Accessions : protein= NP_611447; /// NP_995903;, nucleotide= NM_137603; /// NM_206181;
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0034474.
VDRC has 1 RNAi stocks for FBgn0034474 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1951 ± 2124 of 4 0.80None
Eye4 ± 10 of 4 0.00Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland13 ± 20 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut5 ± 30 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart5 ± 11 of 4 0.00Down
Fat body6 ± 50 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis4 ± 21 of 4 0.00Down
Male accessory glands334 ± 1194 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.00Down
Mated spermatheca3 ± 20 of 4 0.00Down
Adult carcass281 ± 1054 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut12 ± 30 of 4 0.01Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.00Down
Larval fat body2 ± 10 of 4 0.00Down
Larval trachea145 ± 2482 of 4 0.06Down
Larval carcass3 ± 10 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly2515 ± 2824 of 4

Looking for CG13873-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime