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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13874-RA through 18771 annotations produced 1 hits



Odorant-binding protein 56h (Obp56h):

Annotation Number : CG13874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034475
Gbrowse : chr2R:15703081-15703544 (+) // 100.0 //
Probeset : 1624130_at
Accessions : protein= NP_611448;, nucleotide= NM_137604;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0034475.
VDRC has 1 RNAi stocks for FBgn0034475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 14 of 4 1.80Up
Head220 194 of 429.60Up
Eye1 00 of 4 0.26Down
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland6 20 of 4 0.86None
Crop3 10 of 4 0.40None
Midgut5 10 of 4 0.70None
Tubule1 00 of 4 0.20Down
Hindgut1 00 of 4 0.20Down
Heart0 00 of 4 0.06Down
Fat body1 10 of 4 0.22Down
Ovary2 00 of 4 0.30Down
Testis0 00 of 4 0.10Down
Male accessory glands2 20 of 4 0.40None
Virgin spermatheca1 00 of 4 0.13Down
Mated spermatheca1 10 of 4 0.22Down
Adult carcass4 20 of 4 0.70None
Larval CNS3 21 of 4 0.45Down
Larval Salivary gland3 10 of 4 0.49None
Larval midgut1 00 of 4 0.26Down
Larval tubule1 00 of 4 0.20Down
Larval hindgut2 00 of 4 0.34Down
Larval fat body3 20 of 4 0.40None
Larval trachea3 20 of 4 0.50Down
Larval carcass6 41 of 4 0.88None
S2 cells (growing)13 14 of 4 1.84Up
Whole fly7 01 of 4

Looking for CG13874-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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