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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13879-RA through 18771 annotations produced 1 hits



CG13879 (wac):

Annotation Number : CG13879
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035120
Gbrowse : chr3L:258485-258997 (+) // 100.0 //
Probeset : 1626918_at
Accessions : protein= NP_001163306; /// NP_612020;, nucleotide= NM_001169835; /// NM_138176;
Pathway : 0005819 // spindle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from direct a
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from dir
FlyMine data for FBgn0035120.
BioGrid reports that CG13879 interacts with CG16969 CG18094 .
VDRC has 1 RNAi stocks for FBgn0035120 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 ± 14 of 4 0.40Down
Head75 ± 34 of 4 0.50Down
Eye330 ± 84 of 4 2.23Up
Thoracicoabdominal ganglion60 ± 14 of 4 0.40Down
Salivary gland37 ± 54 of 4 0.26Down
Crop37 ± 14 of 4 0.30Down
Midgut25 ± 14 of 4 0.20Down
Tubule9 ± 12 of 4 0.10Down
Hindgut36 ± 24 of 4 0.20Down
Heart54 ± 14 of 4 0.37Down
Fat body39 ± 74 of 4 0.26Down
Ovary265 ± 54 of 4 1.80Up
Testis185 ± 34 of 4 1.20Up
Male accessory glands26 ± 24 of 4 0.20Down
Virgin spermatheca13 ± 04 of 4 0.09Down
Mated spermatheca11 ± 14 of 4 0.08Down
Adult carcass32 ± 54 of 4 0.20Down
Larval CNS343 ± 84 of 4 2.32Up
Larval Salivary gland62 ± 34 of 4 0.42Down
Larval midgut32 ± 14 of 4 0.22Down
Larval tubule35 ± 24 of 4 0.20Down
Larval hindgut56 ± 34 of 4 0.38Down
Larval fat body57 ± 64 of 4 0.40Down
Larval trachea166 ± 174 of 4 1.12None
Larval carcass73 ± 14 of 4 0.49Down
S2 cells (growing)254 ± 64 of 4 1.72Up
Whole fly148 ± 74 of 4

Looking for CG13879-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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