Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13887-RC through 18771 annotations produced 1 hits



(CG13887):

Annotation Number : CG13887
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035165
Gbrowse : chr3L:837855-839747 (+) // 100.0 //
Probeset : 1626382_s_at
Accessions : protein= NP_612062; /// NP_728548;, nucleotide= NM_138218; /// NM_167843;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016021 // integral to membrane // inferred
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035165.
BDGP gene expression has embryonic in situ data for CG13887: 4 pix of staining in 1 body parts.
BioGrid reports that CG13887 interacts with CG3260 .
TRiP has 2 RNAi stocks for FBgn0035165 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035165 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain509 104 of 4 0.80Down
Head643 94 of 4 1.00None
Eye589 174 of 4 0.95None
Thoracicoabdominal ganglion519 144 of 4 0.80Down
Salivary gland1368 274 of 4 2.21Up
Crop1955 314 of 4 3.20Up
Midgut1283 164 of 4 2.10Up
Tubule406 524 of 4 0.70Down
Hindgut1218 284 of 4 2.00Up
Heart1587 524 of 4 2.57Up
Fat body1224 1394 of 4 1.98Up
Ovary659 64 of 4 1.10None
Testis390 94 of 4 0.60Down
Male accessory glands1305 524 of 4 2.10Up
Virgin spermatheca451 174 of 4 0.73Down
Mated spermatheca534 334 of 4 0.86None
Adult carcass1143 444 of 4 1.90Up
Larval CNS563 344 of 4 0.91None
Larval Salivary gland4396 1754 of 4 7.11Up
Larval midgut3483 764 of 4 5.64Up
Larval tubule1717 124 of 4 2.80Up
Larval hindgut1337 454 of 4 2.16Up
Larval fat body1336 904 of 4 2.20Up
Larval trachea1468 1594 of 4 2.38Up
Larval carcass1315 504 of 4 2.13Up
S2 cells (growing)1622 184 of 4 2.62Up
Whole fly618 184 of 4

Looking for CG13887-RC. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime