Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13889-RA through 18771 annotations produced 1 hits



(CG13889):

Annotation Number : CG13889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035168
Gbrowse : chr3L:844267-851080 (+) // 100.0 //
Probeset : 1641002_at
Accessions : protein= NP_612064;, nucleotide= NM_138220;
Interpro : 0004601 // peroxidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0035168.
BioGrid reports that CG13889 interacts with CG3151 CG4215 CG6956 CG3956 CG5847 .
VDRC has 3 RNAi stocks for FBgn0035168 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 12 of 4 0.50Down
Head8 02 of 4 0.90None
Eye1 00 of 4 0.14Down
Thoracicoabdominal ganglion9 02 of 4 1.00None
Salivary gland5 20 of 4 0.61None
Crop3 00 of 4 0.40Down
Midgut4 10 of 4 0.50None
Tubule3 00 of 4 0.30Down
Hindgut5 10 of 4 0.50Down
Heart3 10 of 4 0.35Down
Fat body4 20 of 4 0.43Down
Ovary3 11 of 4 0.30Down
Testis114 24 of 412.00Up
Male accessory glands3 10 of 4 0.40Down
Virgin spermatheca4 11 of 4 0.46Down
Mated spermatheca5 11 of 4 0.59Down
Adult carcass7 31 of 4 0.80None
Larval CNS12 24 of 4 1.33None
Larval Salivary gland4 10 of 4 0.49Down
Larval midgut3 00 of 4 0.36Down
Larval tubule5 10 of 4 0.60None
Larval hindgut2 00 of 4 0.30Down
Larval fat body19 73 of 4 2.10None
Larval trachea3 10 of 4 0.37Down
Larval carcass3 10 of 4 0.41Down
S2 cells (growing)4 11 of 4 0.44None
Whole fly9 12 of 4

Looking for CG13889-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime