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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13891-RA through 18771 annotations produced 1 hits


(CG13891):

Annotation Number : CG13891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035139
Gbrowse : chr3L:433229-433891 (-) // 100.0 //
Probeset : 1624232_at
Accessions : protein= NP_612036;, nucleotide= NM_138192;
FlyMine data for FBgn0035139.
BioGrid reports that CG13891 interacts with CG15737 CG17769 .
VDRC has 3 RNAi stocks for FBgn0035139 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.00Down
Eye6 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland11 ± 20 of 4 0.19Down
Crop5 ± 20 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart7 ± 10 of 4 0.11Down
Fat body5 ± 30 of 4 0.09Down
Ovary1 ± 00 of 4 0.00Down
Testis913 ± 384 of 414.70Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.08Down
Mated spermatheca5 ± 20 of 4 0.09Down
Adult carcass8 ± 50 of 4 0.10Down
Larval CNS4 ± 00 of 4 0.07Down
Larval Salivary gland4 ± 20 of 4 0.08Down
Larval midgut2 ± 00 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.04Down
Larval fat body31 ± 132 of 4 0.50None
Larval trachea13 ± 62 of 4 0.22Down
Larval carcass5 ± 10 of 4 0.09Down
S2 cells (growing)4 ± 00 of 4 0.07Down
Whole fly62 ± 34 of 4

Looking for CG13891-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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